PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20250_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 267aa    MW: 30428.1 Da    PI: 10.5623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20250_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-067597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Neem_20250_f_1 75 FVCEICNKGFQRDQNLQLHRRGH 97
                    89*******************88 PP

2zf-C2H213.20.00026151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  Neem_20250_f_1 151 WKCEKCSKIYAVQSDWKAHSKTC 173
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-67497No hitNo description
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PfamPF121713.6E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355280116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-6146171No hitNo description
SMARTSM00355170151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRVQDFGGF IPVVSTNSPQ QPQKAKKKRS LPGNPDPDAE  60
VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKD IRKRAYVCPE  120
PSCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRNY WSLVQSRMSR VYRRVFVFVS TCFALLLLLH KSGKTLHGIY LKLKYSGRMH  240
GKRTPLIQVS VTGDITRETG QRYVSEI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-128AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050479.11e-131Indeterminate(ID)-domain 12
RefseqXP_015891397.11e-131PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-100IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A061DRD11e-131A0A061DRD1_THECC; Indeterminate(ID)-domain 12
STRINGPOPTR_0005s23660.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-98indeterminate(ID)-domain 12